HsaALTD0004501-1/5 @ hg38
Alternative 5'ss
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147975902-148020723:-
Coord C1 exon
chr2:148020633-148020723
Coord A exon
NA
Coord C2 exon
chr2:147975902-147975975
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
TTATGCCAATTTTTTTAAAGGAT
3' ss Score
7.7
Exon sequences
Seq C1 exon
GTCCGCAGCGGCAGGTGAAGTCTAGCAGAGGACGCGGCCAGGCGATTCGGTGAAGCGATTCCTGCAGGCGTTGGTTCCCCTCTTTGACCTG
Seq A exon
NA
Seq C2 exon
GATTTGAATTTGTTGAAATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947-1-16,2-16,3-16,4-16,5-16-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.216
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTCTAGCAGAGGACGC
R:
ACTCTTTGATTTACGACTGCTCA
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains