HsaALTD0004951-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000130714 | POMT1
Description
protein O-mannosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:9202]
Coordinates
chr9:131511337-131512136:+
Coord C1 exon
chr9:131511337-131511467
Coord A exon
NA
Coord C2 exon
chr9:131512041-131512136
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGG
5' ss Score
6.35
3' ss Seq
TCTTTGTTGACTTCACACAGATA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGAGGACTAGCTCGGATCACTCAGGGTCAGCCACTGGAGGTGGCCTTTGGGTCCCAGGTCACTCTGAGGAACGTCTTTGGGAAACCTGTGCCCTGCTGGCTTCATTCCCACCAGGACACCTACCCCATGAT
Seq A exon
NA
Seq C2 exon
ATATGAGAACGGCCGAGGCAGCTCCCACCAGCAACAGGTGACCTGTTACCCCTTCAAAGATGTCAATAACTGGTGGATTGTAAAGGATCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130714-21-18,22-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0281514=MIR=PU(6.2=25.0)
A:
NA
C2:
PF0281514=MIR=FE(18.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGGTCACTCTGAGGAAC
R:
CTGCCTCGGCCGTTCTCATAT
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development