HsaALTD0005086-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817430-2817966:+
Coord C1 exon
chr16:2817430-2817456
Coord A exon
chr16:2817457-2817592
Coord C2 exon
chr16:2817801-2817966
Length
136 bp
Sequences
Splice sites
5' ss Seq
AAAGTAACT
5' ss Score
4.33
3' ss Seq
AGTTCCTCTGACCATCCGAGGAC
3' ss Score
1.06
Exon sequences
Seq C1 exon
AGTCGCAGGAGGCGGCGCCGTTATCAG
Seq A exon
GTAGGGCGCCCAGGACGCGCGATTCCTGCCAGGGCCGTTGGGCCGAGGTGGACGGGGGGCGGTGAGGGGGTAGAGGGGGGCCTTTACTGCTCTCTCGCCCCCGCCCCCGGGATCGAGAACTCTGTTGGCGTGGAAA
Seq C2 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-1-4,2-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.3=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development