HsaALTD0005089-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000184647 | PRSS55
Description
protease, serine, 55 [Source:HGNC Symbol;Acc:30824]
Coordinates
chr8:10388805-10390558:+
Coord C1 exon
chr8:10388805-10389055
Coord A exon
chr8:10389056-10389222
Coord C2 exon
chr8:10390416-10390558
Length
167 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GCGCTTTCTCTCTGGGCCAGCTG
3' ss Score
7.08
Exon sequences
Seq C1 exon
TCCAGAAGAACTGAGTGTCGTGCTGGGGACCAACGACTTAACTAGCCCATCCATGGAAATAAAGGAGGTCGCCAGCATCATTCTTCACAAAGACTTTAAGAGAGCCAACATGGACAATGACATTGCCTTGCTGCTGCTGGCTTCGCCCATCAAGCTCGATGACCTGAAGGTGCCCATCTGCCTCCCCACGCAGCCCGGCCCTGCCACATGGCGCGAATGCTGGGTGGCAGGTTGGGGCCAGACCAATGCTG
Seq A exon
GTATGTGACTGCTCAGCTTCCCCTGGGGAAAAAGCCACTGCAATGTGAAGGAGAGGGGAGGAAGCTAAGGAAGGAGTGAGGACAAGACTTGCATTGGAGCAGATTCCCGCTCAGTGGAGTCTCACAGTGCCCAAAGTTTAGCTCCTTTTGGGTGCCGAAACCCCAAG
Seq C2 exon
CTGACAAAAACTCTGTGAAAACGGATCTGATGAAAGCGCCAATGGTCATCATGGACTGGGAGGAGTGTTCAAAGATGTTTCCAAAACTTACCAAAAATATGCTGTGTGCCGGATACAAGAATGAGAGCTATGATGCCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184647-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGCCAGCATCATTCTTCA
R:
TCCTCCCAGTCCATGATGACC
Band lengths:
249-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)