HsaALTD0005307-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000170667 | RASA4B
Description
RAS p21 protein activator 4B [Source:HGNC Symbol;Acc:35202]
Coordinates
chr7:102125486-102129045:-
Coord C1 exon
chr7:102128667-102129045
Coord A exon
chr7:102128228-102128666
Coord C2 exon
chr7:102125486-102125606
Length
439 bp
Sequences
Splice sites
5' ss Seq
TAAGTTTTG
5' ss Score
-15.02
3' ss Seq
TGCCCTCTCTGTGCCCCCAGGTC
3' ss Score
13.42
Exon sequences
Seq C1 exon
TGTGTGAATGAGCTTAACCAGTGGCTGTCTGCGCTGCGGAAGGTGAGCATCAACAACACCGGACTGCTGGGCTCCTACCACCCTGGCGTCTTCCGTGGGGACAAGTGGAGCTGCTGCCACCAAAAAGAGAAGACAGGTGGGAGAGGAGGCCTGGGTCCCGGGCTCTGCATCCGTCCACTGCGAGATCGGGCCTCTGGCTGAACGATGGGACCCTGAGCCCTGCTGTGCACCTGCAGGGACCTAACCCAAGGAATGCTGGCCCCTCCAGGAGCTCTGGGCAGAAAGGGTCCCGTGGACCAGGTGGTTTGGGAAATGCCACGTGATGTGTGTGATGCATATGAGTGAATTCGCTGAAGGCTCTAAGGAGGCCCGAAAACAC
Seq A exon
GTTAGAATCCCATTTCTTTTTATTTCTTCTTCTTCTTTTTTTTTTTTTTTTTCAGACACAGACTTTCACTCTGTCCCCCAGACTGGAGTGCAATGGCACGATCTCAGCTCGCTGCAATCTCCACCTCCCAGGGTCAAGCAATTCTCCTGCCTCAACCTCCCCAGTAGCTGGGATGACCGGCACTCGCCACCAAGCCTAGCTAATTTTTTTGTATTTTGACTAGAGATGGGGTTTCACCATGTTAGTCAAGCTGCTCTTGTTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGATACTGAGTCTCGCTCTATCATCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAATCTCCGTTTCCCAGGCTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTACTACAGGCGCAAGCCACTGCACCCAGCTAA
Seq C2 exon
GTCAGGGCTGCGATAAGACCCGGTCACGGGTGACCCTGCAGGAGTGGAATGACCCTCTTGACCATGACCTTGAGGCCCAGCTCATCTACCGGCACCTGCTGGGCGTGGAGGCCATGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170667-26-30,27-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077914=BTK=PD(28.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCCACCAAAAAGAGA
R:
GGCCTCAAGGTCATGGTCAAG
Band lengths:
347-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)