HsaALTD0005338-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56568066-56569033:+
Coord C1 exon
chr12:56568066-56568166
Coord A exon
NA
Coord C2 exon
chr12:56568975-56569033
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAC
5' ss Score
1.3
3' ss Seq
TGCATTTTCCTCTCCCTTAGATA
3' ss Score
10.24
Exon sequences
Seq C1 exon
ATGATGAGGCTGAGACACCAAAAGGTTCAATGACTTGTTCAAGATCACGCATAGCTAAAAAGTGGCAGAACCAGGATTTGAACCAAAGCAATTTGGCTCAG
Seq A exon
NA
Seq C2 exon
ATATGGCAAGATTGTTTCCACTAAGGCCATACTGGACAAGACCACAAACAAATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-17-93,18-93-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCATAGCTAAAAAGTGGCA
R:
GTGGTCTTGTCCAGTATGGCC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development