HsaALTD0005380-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000237441 | RGL2
Description
ral guanine nucleotide dissociation stimulator-like 2 [Source:HGNC Symbol;Acc:9769]
Coordinates
chr6:33263285-33264097:-
Coord C1 exon
chr6:33263995-33264097
Coord A exon
chr6:33263805-33263994
Coord C2 exon
chr6:33263285-33263536
Length
190 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CTCTGACCTCTACCCTGCAGGAA
3' ss Score
9.17
Exon sequences
Seq C1 exon
CCATCTCTGTACTGTCAACCTGGCTGGCCTCTCACCCTGAGGATTTTGGCTCTGAGGCCAAGGGTCAGCTTGACCGGCTTGAGAGCTTCTTACTTCAGACAGG
Seq A exon
GTATGCAGCAGGGAAGGGTGTTGGGGGGGGCAGCGCTGACCTCATCCGCAATCTCCGGTCCCGGGTGGACCCCCAGGCCCCCGACCTTCCTAAGCCCCTGGCCCTCCCCGGCGATCCCCCTGCTGACCCCACGGATGTCCTGGTGTTCCTCGCTGACCACTTGGCCGAACAGCTGACCCTGCTAGATGCG
Seq C2 exon
GAACTTTTTCTCAATTTGATCCCCTCTCAGTGCCTGGGAGGCCTGTGGGGTCACAGAGACCGGCCAGGACATTCTCACCTCTGCCCATCTGTCCGAGCTACTGTCACACAGTTTAACAAGGTGGCAGGGGCAGTGGTTAGTTCTGTCCTGGGGGCTACTTCCACTGGAGAGGGACCTGGGGAGGTGACCATACGGCCACTCCGTCCCCCACAGAGGGCCCGGCTCCTGGAGAAGTGGATCCGCGTGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237441-9-15,12-15-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(31.6=31.0),PF106304=DUF2476=PU(27.8=47.0),PF0061714=RasGEF=PU(7.2=16.0)
A:
NA
C2:
PF106304=DUF2476=FE(49.1=100),PF0061714=RasGEF=FE(37.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACTGTCAACCTGGCTGG
R:
ACAGAACTAACCACTGCCCCT
Band lengths:
243-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)