HsaALTD0005538-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136942 | RPL35
Description
ribosomal protein L35 [Source:HGNC Symbol;Acc:10344]
Coordinates
chr9:127620159-127620816:-
Coord C1 exon
chr9:127620737-127620816
Coord A exon
chr9:127620555-127620736
Coord C2 exon
chr9:127620159-127620346
Length
182 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
3' ss Seq
CCCTGCCGTCTGTCTCCCAGGGC
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCAGCAGCTGGTGGGCCCTGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAG
Seq A exon
GTAATGGTAACTACCCCCGGGGCTTGGTGGGTGCTGCGTGCCCTGTACTAGGTTGTCATGTGACTGTCCTCGTGACTGGGAATCGGGCAGTGGAAGGAGCACTGAGTTGGGAGTCACTTGACTGAGATGCAAGCCCCGGCTCTTCCACAGCTTTGCCAAGACTTGGACACTCAGCCCAGTAG
Seq C2 exon
GGCAAGAAGTACAAGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTACCCGCTGCGGAAGTACGCGGTCAAGGCCTGAGGGGCGCATTGTCAATAAAGCACAGCTGGCTGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136942-7-7,8-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.673
Domain overlap (PFAM):
C1:
PF0038014=Ribosomal_S9=PD(14.6=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATGGACAGAGTACTGCCT
R:
GTCTCAGCCAGCTGTGCTTTA
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)