HsaALTD0005538-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000136942 | RPL35
Description
ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:10344]
Coordinates
chr9:124857880-124858537:-
Coord C1 exon
chr9:124858458-124858537
Coord A exon
chr9:124858452-124858457
Coord C2 exon
chr9:124857880-124858067
Length
6 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACT
5' ss Score
6.06
3' ss Seq
CCCTGCCGTCTGTCTCCCAGGGC
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCAGCAGCTGGTGGGCCCTGCATACAGATGGACAGAGTACTGCCTCAGCCCCCAGCATGCTCTTGCTAACCAGAGCCGAG
Seq A exon
GTAATG
Seq C2 exon
GGCAAGAAGTACAAGCCCCTGGACCTGCGGCCTAAGAAGACACGTGCCATGCGCCGCCGGCTCAACAAGCACGAGGAGAACCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTACCCGCTGCGGAAGTACGCGGTCAAGGCCTGAGGGGCGCATTGTCAATAAAGCACAGCTGGCTGAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136942-20-13,21-13,22-13-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGAGTACTGCCTCAGC
R:
ATGGCACGTGTCTTCTTAGGC
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains