HsaALTD0005551-1/3 @ hg19
Alternative 5'ss
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:10364]
Coordinates
chr9:136215107-136215897:+
Coord C1 exon
chr9:136215107-136215243
Coord A exon
NA
Coord C2 exon
chr9:136215777-136215897
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGAT
5' ss Score
1.48
3' ss Seq
GACGTTTTCTTTCTGCCCAGCCG
3' ss Score
7.04
Exon sequences
Seq C1 exon
TGAGCTGTAGTTCCGTGGCACTATAGCCAGGTTCCGGCTGTATCCGCTGCCATCCTCCTCCAGGCGCGGCCTCGGAGGGCCTCCTGCTCCTCCTGGCGCTAGGAGAGCCCCACTCGGTGTGGCACGGAGACACCGAG
Seq A exon
NA
Seq C2 exon
CCGAAAGGAAAGAAGGCCAAGGGAAAGAAGGTGGCTCCGGCCCCAGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGTGGTGAATCCCCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-1-1,2-1,3-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGTAGTTCCGTGGCA
R:
AGGCCTTTTCTCAAACAGGGG
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)