HsaALTD0005627-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000174891 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:24152]
Coordinates
chr3:158178724-158254987:+
Coord C1 exon
chr3:158178724-158178792
Coord A exon
NA
Coord C2 exon
chr3:158254881-158254987
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CATTATACCCTCTTTTTCAGACC
3' ss Score
8.96
Exon sequences
Seq C1 exon
CAAAAGCTGATGAAGCATTGAAAGCCAAAGAAAGAAATGAGGAAGAAGCAAAGAGAAGAAAGGAGGAAG
Seq A exon
NA
Seq C2 exon
ACCAAGCCACCCTGGTAGAACAAGTAAAAAGAGTAAAAGAAATTGAAGCTATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-18-24,19-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.427
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(10.1=100)
A:
NA
C2:
PF154401=THRAP3_BCLAF1=FE(15.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAAGCATTGAAAGCCA
R:
TTTTACTTGTTCTACCAGGGTGGC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)