HsaALTD0005627-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000174891 | RSRC1
Description
arginine and serine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
Coordinates
chr3:158460935-158537198:+
Coord C1 exon
chr3:158460935-158461003
Coord A exon
chr3:158461004-158461009
Coord C2 exon
chr3:158537092-158537198
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGCATGT
5' ss Score
2.03
3' ss Seq
CATTATACCCTCTTTTTCAGACC
3' ss Score
8.96
Exon sequences
Seq C1 exon
CAAAAGCTGATGAAGCATTGAAAGCCAAAGAAAGAAATGAGGAAGAAGCAAAGAGAAGAAAGGAGGAAG
Seq A exon
GTAAAG
Seq C2 exon
ACCAAGCCACCCTGGTAGAACAAGTAAAAAGAGTAAAAGAAATTGAAGCTATTGAAAGTGATTCTTTTGTTCAGCAGACATTCAGATCAAGTAAAGAAGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-38-48,39-48-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.451
Domain overlap (PFAM):
C1:
PF154401=THRAP3_BCLAF1=FE(10.1=100)
A:
NA
C2:
PF154401=THRAP3_BCLAF1=FE(15.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGAAGCATTGAAAGCCA
R:
TTTTACTTGTTCTACCAGGGTGGC
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development