HsaALTD0005628-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000174891 | RSRC1
Description
arginine and serine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]
Coordinates
chr3:158110156-158122298:+
Coord C1 exon
chr3:158110156-158110197
Coord A exon
NA
Coord C2 exon
chr3:158122103-158122298
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGA
5' ss Score
3.51
3' ss Seq
CTTCAAATTTATGCTTATAGAAA
3' ss Score
4.52
Exon sequences
Seq C1 exon
AGAAACGACTCAGGGACTGCGGCGCTTGCACGTCAACGGGAG
Seq A exon
NA
Seq C2 exon
AAATGGGACGTCGGTCATCAGATACTGAAGAAGAAAGCAGAAGCAAGAGAAAAAAGAAACACCGTAGACGGTCCTCCTCGAGCAGTTCTTCAGATAGTAGAACATACAGCCGAAAGAAAGGAGGAAGGAAATCAAGATCAAAGTCAAGATCTTGGTCCAGAGATCTTCAGCCTCGTTCACATTCTTATGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-2-10,3-10,4-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development