HsaALTD0006030-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000004939 | SLC4A1
Description
solute carrier family 4 member 1 (Diego blood group) [Source:HGNC Symbol;Acc:HGNC:11027]
Coordinates
chr17:44261575-44262066:-
Coord C1 exon
chr17:44262031-44262066
Coord A exon
NA
Coord C2 exon
chr17:44261575-44261636
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGCAGGT
5' ss Score
1.9
3' ss Seq
AACCGACCTCTGGTTTTCAGCTC
3' ss Score
6.37
Exon sequences
Seq C1 exon
AGCTCAGTGAGACACTGTGCTGACGGGCTCATTGAG
Seq A exon
NA
Seq C2 exon
CTCACGACACCGAGGCAACAGCCACAGACTACCACACCACATCACACCCGGGTACCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000004939-5-8,6-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.857
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGACACTGTGCTGACGG
R:
GTACCCGGGTGTGATGTGGT
Band lengths:
86-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development