HsaALTD0006244-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000144057 | ST6GAL2
Description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 [Source:HGNC Symbol;Acc:10861]
Coordinates
chr2:107459491-107503532:-
Coord C1 exon
chr2:107503432-107503532
Coord A exon
chr2:107503187-107503431
Coord C2 exon
chr2:107459491-107460490
Length
245 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
GCCATCTGGCTGTTTTTCAGGTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
TGGCCGCCCACAGCCTGTGCGCATTCCTGCATTCCTGCCGCCGCCCGGGACCCGAGTGCCCCGGAGGTGTCCAGGCGCGGTGCCAGGCGGGTACTGTGCAG
Seq A exon
GTAACCTTCGGAAGAACTAGGGCTGGATGGAGGCGGCGGCCGGGGAGAAACACGCCTTTTTAGGCAGCCGTGCTGCCCCGCACCGCCCCACGCAGCCCAAGTCTGCAGTCACTCTCCGCGACAAGCAGAAATCCGCGCGCAGCCAGGGAGCGCCCCGCCTGCGCTCGCCGGCGGGCCGAGCTGCCGGGCCGGGGGCGCGGGGAGGGGGCAGCCCAACTTCCCAGTGCCCGGCTCCCGCCAGCTAG
Seq C2 exon
GTTCATTCTGCCACCCATCTGCATTAAGACACAAGGTGCTGACCGCAGAGACCTGCCATGAAACCACACTTGAAGCAATGGAGACAACGAATGCTTTTCGGAATATTCGCTTGGGGGCTCCTCTTTTTGCTGATTTTCATCTACTTCACCGACAGCAACCCCGCTGAGCCTGTACCCAGCTCCCTCTCCTTCCTGGAGACCAGGAGGCTCCTGCCGGTGCAGGGGAAGCAGCGGGCCATCATGGGCGCCGCACATGAGCCCTCCCCGCCTGGGGGCCTGGACGCACGCCAGGCGCTGCCCCGCGCCCACCCAGCCGGTTCCTTTCATGCGGGGCCTGGAGACCTGCAGAAATGGGCCCAGTCCCAAGATGGGTTTGAACATAAAGAGTTTTTTTCATCCCAGGTGGGGAGAAAATCTCAAAGTGCTTTCTACCCGGAGGATGACGACTACTTTTTTGCTGCTGGTCAGCCAGGGTGGCACAGCCACACTCAGGGGACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144057-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.314
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0077713=Glyco_transf_29=PU(27.0=22.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGTGCGCATTCCTG
R:
GGAGCCTCCTGGTCTCCA
Band lengths:
302-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)