HsaALTD0006270-3/4 @ hg38
Alternative 5'ss
Gene
ENSG00000204344 | STK19
Description
serine/threonine kinase 19 [Source:HGNC Symbol;Acc:HGNC:11398]
Coordinates
chr6:31978903-31979553:+
Coord C1 exon
chr6:31978903-31978998
Coord A exon
chr6:31978999-31979010
Coord C2 exon
chr6:31979414-31979553
Length
12 bp
Sequences
Splice sites
5' ss Seq
TGTGTGCGT
5' ss Score
0.78
3' ss Seq
TCTCTCATCTCTGCTTGTAGGTC
3' ss Score
10.19
Exon sequences
Seq C1 exon
AAGGAGCTTCAAGAGCAGGGGGAGATCAGAATCGTCCAGCTGGGCTTCGACTTGGATGCCCATGGAATTATCTTCACTGAGGACTACAGGACCAGA
Seq A exon
GTATGTGACTGT
Seq C2 exon
GTCCTCAAGGCCTGTGATGGCCGACCGTATGCTGGGGCAGTGCAGAAATTTCTAGCTTCAGTACTTCCAGCCTGTGGGGACCTTAGTTTCCAGCAGGACCAAATGACACAGACCTTTGGCTTCAGGGACTCAGAAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204344-9-18,10-18,11-18,12-18-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF104944=Stk19=FE(14.2=100)
A:
NA
C2:
PF104944=Stk19=FE(21.0=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTGGATGCCCATGGAAT
R:
AGAAATTTCTGCACTGCCCCA
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains