HsaALTD0006318-1/3 @ hg19
Alternative 5'ss
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:11475]
Coordinates
chr9:136223924-136224690:+
Coord C1 exon
chr9:136223924-136223944
Coord A exon
NA
Coord C2 exon
chr9:136224587-136224690
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTAGGT
5' ss Score
4.85
3' ss Seq
TTGGTCTCTCTGCTCTGTAGGCA
3' ss Score
8.4
Exon sequences
Seq C1 exon
CGTGCCCAGCACCAAGAACCC
Seq A exon
NA
Seq C2 exon
GCACCAGTTGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGCGGTACCAGCGAGCTCTGTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291-1-2,2-2,3-2-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(20.2=100)
A:
NA
C2:
PF054776=SURF2=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCACCAAGAACCC
R:
ATTTACACAGAGCTCGCTGGT
Band lengths:
122-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)