HsaALTD0006318-1/4 @ hg38
Alternative 5'ss
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:HGNC:11475]
Coordinates
chr9:133357048-133357814:+
Coord C1 exon
chr9:133357048-133357068
Coord A exon
NA
Coord C2 exon
chr9:133357711-133357814
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTAGGT
5' ss Score
4.85
3' ss Seq
TTGGTCTCTCTGCTCTGTAGGCA
3' ss Score
8.4
Exon sequences
Seq C1 exon
CGTGCCCAGCACCAAGAACCC
Seq A exon
NA
Seq C2 exon
GCACCAGTTGTTCTGCAAACTCACCCTGCGGCACATCAACAAGTGCCCAGAACACGTGCTGAGGCACACCCAGGGCCGGCGGTACCAGCGAGCTCTGTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291-1-2,2-2,3-2,4-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(20.2=100)
A:
NA
C2:
PF054776=SURF2=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCACCAAGAACCC
R:
ATTTACACAGAGCTCGCTGGT
Band lengths:
122-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains