HsaALTD0006955-3/3 @ hg38
Alternative 5'ss
Gene
ENSG00000197355 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr9:137078141-137078677:+
Coord C1 exon
chr9:137078141-137078220
Coord A exon
chr9:137078221-137078286
Coord C2 exon
chr9:137078502-137078677
Length
66 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCC
5' ss Score
7.84
3' ss Seq
TCACCGCGCCTCCCTTGCAGGTA
3' ss Score
11.57
Exon sequences
Seq C1 exon
GTACCGTGTGGGGCTGCCCAGCCGGAAGACCCTGTACCAGCTGCAGGCGGAGCGGATTCGGCGGGTGGAGCAGCTGGCCG
Seq A exon
GTGAGCGCCACGGGACCCGCTGCACCGTCCCCTGGTGTGTCCTGCCTGCCCTACCTCGGCCCGGAG
Seq C2 exon
GTACGTCATGACCAGCGAGTTCACTCTGGGGCCCACGGCCGAGTTCTTCAGGGAGCACAACTTCTTCCACCTGGACCCCGCCAACGTGGTCATGTTTGAGCAGCGCCTGCTGCCTGCTGTGACCTTTGATGGCAAGGTTATCCTGGAGCGGAAAGACAAAGTTGCCATGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197355-2-3,3-3,4-3-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(17.8=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGTACCAGCTGCAGG
R:
ATCAAAGGTCACAGCAGGCAG
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains