HsaALTD0007001-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170783830-170785378:+
Coord C1 exon
chr2:170783830-170783915
Coord A exon
chr2:170783916-170783917
Coord C2 exon
chr2:170785239-170785378
Length
2 bp
Sequences
Splice sites
5' ss Seq
CATATCCTT
5' ss Score
-20.06
3' ss Seq
TCTTGACATATATATCATATTCC
3' ss Score
-4.75
Exon sequences
Seq C1 exon
GAATGTCTGATGATGAGATTCTCAGGGCCGAGATGGTAGCCCAGCTGTGTATGAATGACAGGACACACAGTTCATTGCTGGACCTC
Seq A exon
AT
Seq C2 exon
TCCAGAAAATCCTAATCCCAAAAGTGGCATTATTCCAGGCAGTTACAGCTTTGAATCAGTTTTATCAGCTGTAGCTGATTTTAAGGCTCCTGTTTTTGAACCTGGAGGTTCTATGCAACAAGGCATGTATACTCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-18-19,19-19-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=NA C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGCCCAGCTGTGTATGA
R:
ACTGCCTGGAATAATGCCACT
Band lengths:
96-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)