HsaALTD0007359-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71246353-71246692:-
Coord C1 exon
chrX:71246631-71246692
Coord A exon
NA
Coord C2 exon
chrX:71246353-71246512
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
3' ss Seq
ATGTTCCTCTGTCTTTGCAGATC
3' ss Score
12.69
Exon sequences
Seq C1 exon
GTCAGTCTCCTGAGTCAAAACCCCAGACACCCTCTCAAACCAAAGTGGAGAACAGCAACACA
Seq A exon
NA
Seq C2 exon
ATCCCTGTGAAGACCCGATCAGCTCCCACTGCTCCCACCCCTCCACCCCCACCACCCCCAGCAACACCCCGCAAAAACAAGGCTGCCATGTGTAAGCCACTGATGCAGAATCGGGGCGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGAAGTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-24-30,25-30-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCCAGACACCCTCTCAAA
R:
CCTTGTTTTTGCGGGGTGTTG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains