HsaALTD0007360-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger, MYM-type 3 [Source:HGNC Symbol;Acc:13054]
Coordinates
chrX:70463679-70464320:-
Coord C1 exon
chrX:70464173-70464320
Coord A exon
chrX:70464152-70464172
Coord C2 exon
chrX:70463679-70463830
Length
21 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TGCACAACATATCACTGCAGCCA
3' ss Score
3.71
Exon sequences
Seq C1 exon
GGTCAAAAGCGGCTGGTGCTTTCCGAAAGCTGCTCCCGGGACTCCATGAGCAGTCAGCCTAGTTGTACCGGGCTCAACTATTCATATGGTGTCAATGCTTGGAAGTGCTGGGTGCAGTCAAAATATGCCAATGGAGAAACCAGCAAGG
Seq A exon
GTGATGAGCTGCGCTTTGGCC
Seq C2 exon
CCAAACCCATGCGTATCAAAGAGGATATTCTCGCCTGCTCAGCTGCTGAGCTCAACTACGGTCTGGCCCAGTTTGTGAGAGAAATCACTCGGCCCAATGGTGAACGATATGAACCTGACAGTATCTACTATTTGTGTCTTGGCATCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130-29-28,30-28-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCTTGGAAGTGCTGGGTG
R:
GACCGTAGTTGAGCTCAGCAG
Band lengths:
118-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)