HsaALTD0007369-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000181896 | ZNF101
Description
zinc finger protein 101 [Source:HGNC Symbol;Acc:HGNC:12881]
Coordinates
chr19:19677864-19678786:+
Coord C1 exon
chr19:19677864-19677986
Coord A exon
NA
Coord C2 exon
chr19:19678726-19678786
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTCGGT
5' ss Score
3.52
3' ss Seq
TCTCTGGGTCTACATTTTAGGAA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGAGTCCTTCCCAGAAGAATCTCTACAGAGATGTGACGCTGGAAACCTTCAGGAACCTGGCCTCG
Seq A exon
NA
Seq C2 exon
GAATCCAATGGAAAGACCAGGACATTGAGAATCTGTACCAAAACCTGGGGATTAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181896-9-9,10-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.0=92.7)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTGAGTCCTTCCCAG
R:
TGTCCTGGTCTTTCCATTGGA
Band lengths:
96-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development