HsaALTD0007370-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000152926 | ZNF117
Description
zinc finger protein 117 [Source:HGNC Symbol;Acc:12897]
Coordinates
chr7:64441765-64442494:-
Coord C1 exon
chr7:64442368-64442494
Coord A exon
NA
Coord C2 exon
chr7:64441765-64441860
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAAG
5' ss Score
-0.12
3' ss Seq
ATTTATTTTCAATAAAACAGGTA
3' ss Score
5.72
Exon sequences
Seq C1 exon
GGACCATTGACATTTATGGATGTGGCCATAGAATTCTCTTTGGAGGAGTGGCAATGCCTGGACACTGCACAGCAGAATTTATATAGGCATGTGATGTGAGAGAACTACAGAAACCTGGTTTTCTTGG
Seq A exon
NA
Seq C2 exon
GTATTGCTGTCTCTAAGCCAGACCTGATTACCTGTCTGGAGCAAGGAAAAGAGCCCTGGAATATGAAGAGACATGAGATGGTAGCTAAACATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152926-3-3,4-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATGTGATGTGAGAGAACT
R:
TTCCAGGGCTCTTTTCCTTGC
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)