HsaALTD0007378-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000204920 | ZNF155
Description
zinc finger protein 155 [Source:HGNC Symbol;Acc:12940]
Coordinates
chr19:44488297-44492710:+
Coord C1 exon
chr19:44488297-44488397
Coord A exon
chr19:44488398-44488474
Coord C2 exon
chr19:44492611-44492710
Length
77 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
ACATCTCTCTTTTTCTGCAGACT
3' ss Score
10.94
Exon sequences
Seq C1 exon
TTCGGGGGATTCTGGGAAGTGTAGTCCAGACGCCTGTGGCATCATCGACACTTCCGGTCTCCGAGCAGGACACTGCTACTTAACAAGGTGGTTTGAGCCAA
Seq A exon
GTATGTGTCTTGCGGGTCTTTGCGAAAGTGAACCAGTTATTAGGGGCGCCTAACGACCTGGGGGGTCAACTAAGGGG
Seq C2 exon
ACTGTGGCACGTTTCAGGCAGGATTCCTCCTTCATTCAAACTGCATCACCCAGGAGTCTGCAAATTCCCCAAAGTAGGAGGAAAAATGACCACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204920-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGGATTCTGGGAAGTGTA
R:
GGGAATTTGCAGACTCCTGGG
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)