HsaALTD0007378-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000204920 | ZNF155
Description
zinc finger protein 155 [Source:HGNC Symbol;Acc:HGNC:12940]
Coordinates
chr19:43984221-43988558:+
Coord C1 exon
chr19:43984221-43984231
Coord A exon
chr19:43984232-43984245
Coord C2 exon
chr19:43988459-43988558
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
ACATCTCTCTTTTTCTGCAGACT
3' ss Score
10.94
Exon sequences
Seq C1 exon
TACTTAACAAG
Seq A exon
GTGGTTTGAGCCAA
Seq C2 exon
ACTGTGGCACGTTTCAGGCAGGATTCCTCCTTCATTCAAACTGCATCACCCAGGAGTCTGCAAATTCCCCAAAGTAGGAGGAAAAATGACCACATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204920-1-14,2-14,3-14,4-14,5-14-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains