HsaALTD0007383-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:12986]
Coordinates
chr11:3382973-3383832:-
Coord C1 exon
chr11:3383776-3383832
Coord A exon
NA
Coord C2 exon
chr11:3382973-3383119
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTTTTTGTATTTTCTGTAGAGA
3' ss Score
8.6
Exon sequences
Seq C1 exon
GTATTTTCTTTGTGGTTACCATGGAAATTATATAAAACATCTTAAAGTTACAACAAG
Seq A exon
NA
Seq C2 exon
AGATGGGATTTCACCATGCTACTCAGGCTTGTCTTGAACTCCTGGGCTCAAGCGATCTGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCGTGCCCAGCCAGGCCTCAATGTTTCTGTGGACAAATTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801-7-10,8-10-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTTTGTGGTTACCATGGAAA
R:
TGAGCCCAGGAGTTCAAGACA
Band lengths:
104-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)