HsaALTD0007389-2/3 @ hg19
Alternative 5'ss
Gene
ENSG00000149050 | ZNF214
Description
zinc finger protein 214 [Source:HGNC Symbol;Acc:13006]
Coordinates
chr11:7020549-7024082:-
Coord C1 exon
chr11:7023948-7024082
Coord A exon
chr11:7023944-7023947
Coord C2 exon
chr11:7020549-7022786
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
3' ss Seq
TTATCTTTTTATTTTTCTAGAAA
3' ss Score
9.63
Exon sequences
Seq C1 exon
CCTGATCTTTGACCAGATGGCAGTAACATTTGAAGATGTGACTATTATTTTTACATGGGAGGAGTGGAAATTCCTGGATTCTTCTCAAAAAAGACTCTACAGGGAGGTCATGTGGGAGAACTACACAAATGTCAT
Seq A exon
GTCA
Seq C2 exon
AAAACTGGAATGAGAGCTACAAATCCCAAGAAGAAAAATTCAGATACTTAGAATATGAAAATTTTTCCTACTGGCAAGGCTGGTGGAATGCTGGCGCCCAGATGTATGAGAATCAGAACTATGGGGAAACTGTTCAAGGGACAGATTCCAAAGACCTCACACAGCAAGATCGTTCCCAGTGTCAGGAATGGTTAATACTCTCCACACAAGTACCAGGGTATGGGAACTATGAACTGACTTTTGAAAGCAAAAGTCTCAGGAACTTAAAATATAAAAATTTTATGCCTTGGCAGTCCTTAGAAACAAAAACCACTCAAGACTATGGTAGAGAAATCTACATGAGTGGTTCACATGGTTTTCAAGGGGGCAGATACCGTCTTGGCATATCCAGGAAAAACCTCTCCATGGAAAAAGAACAGAAGCTCATAGTTCAGCATTCTTATATCCCAGTGGAGGAAGCCCTTCCACAGTATGTTGGGGTGATATGTCAAGAAGACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149050-1-2,2-2,3-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF097235=Zn-ribbon_8=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGAGAACTACACAAATGTCA
R:
CCAGCCTTGCCAGTAGGAAAA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)