HsaALTD0007391-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000167377 | ZNF23
Description
zinc finger protein 23 (KOX 16) [Source:HGNC Symbol;Acc:13023]
Coordinates
chr16:71490667-71495907:-
Coord C1 exon
chr16:71495772-71495907
Coord A exon
chr16:71495562-71495771
Coord C2 exon
chr16:71490667-71490731
Length
210 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTCTTTGTGTTTCTCCTTAGCTC
3' ss Score
10.43
Exon sequences
Seq C1 exon
CTTGCGCCCATTGGAAGGGGAAACGCACGTTGCTGTCCCAGCCACGAGGCCCTGAGCATTTAGCACTTGGTCGACGGGGGAAGATGTGTCGGTGCAGCTAAAAGATGGAATATTTGCGGGCGTGAAGCGGCCCGAG
Seq A exon
GTGATACCACAAGTCTTTTGACATGCTGAGGTCTGGCAGGAACATTAACCTATGTGCATCCCGAGTATGGACCGTGTGCTCCCAGGCTCCTGACATAGGGTCATGAATTAGGGCCGAGTGGGAGCGCAGAGCCCCTCCCAGTCACCCGGCAGCAGAAGCAGCCCGGCTTTTGGAGGACATTGTCTCCTGGAGCAGTGTCAGTCCCAAAAG
Seq C2 exon
CTCCAGCCCTTCTCTGAGACGGGGACCAGGGGATGGCAGCCATGCACCTGACAGCCTGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167377-8-12,9-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGCCCATTGGAAGGG
R:
GCCAGGCTGTCAGGTGCAT
Band lengths:
196-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)