HsaALTD0007416-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000168661 | ZNF30
Description
zinc finger protein 30 [Source:HGNC Symbol;Acc:13090]
Coordinates
chr19:35418020-35420860:+
Coord C1 exon
chr19:35418020-35418120
Coord A exon
chr19:35418121-35418186
Coord C2 exon
chr19:35420788-35420860
Length
66 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
CTCCTCTCTGGATTTTCTAGCTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
GGTTGGAGCAGCCCCGCCGGGCAACTTGAATTTCTGCAAACGAACACAGCACCGGGAGCTCTGCAGACCTGTGTCGGCGCGGAACCCGGACTGAGACATGC
Seq A exon
GTGAGCGTTGGGTGGACCGGGCGAGGATCCCGGGCCGGCGAGTGCGGGAGCGGCAGGGCAGGGAGG
Seq C2 exon
CTTTTGAACTTCTCAGATAGAGGAACCCCAGTGAAGACTGATCAGTTCTTACAATTCTCAAAGCATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168661-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGGGCAACTTGAATTTCT
R:
TGGGCCATGCTTTGAGAATTGT
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)