HsaALTD0007420-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:13847]
Coordinates
chr6:28971290-28971842:-
Coord C1 exon
chr6:28971723-28971842
Coord A exon
chr6:28971675-28971722
Coord C2 exon
chr6:28971290-28971371
Length
48 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CATTCTGTGTCTTGCAATAGGTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
Seq A exon
GTAAGAAGAGGAGGGTCTGTGATACATCACAAGGAGGAAGAAGGAGAA
Seq C2 exon
GTTGTGCTGTTGGATGAGAGTTCAGGACCACCAAGCCAGCTGCTTTGGACCCGCCAGGATACCCAGCTCCCTCAGGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGGACAGCAGTGGAAGA
R:
CTTTCCTGAGGGAGCTGGGTA
Band lengths:
135-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)