HsaALTD0007421-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000169740 | ZNF32
Description
zinc finger protein 32 [Source:HGNC Symbol;Acc:13095]
Coordinates
chr10:44139307-44141650:-
Coord C1 exon
chr10:44141512-44141650
Coord A exon
chr10:44141406-44141511
Coord C2 exon
chr10:44139307-44140249
Length
106 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGAG
5' ss Score
-1.36
3' ss Seq
CTTCCCTCTCATTTTATCAGATG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTGCTCAGGAACAGCCCATGGAAGAATCATATGAAGAGGTGGTGACTGAGGTCGTAAGCAGGAGTGGACATGTTTGGATTTCCAACAGCTACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCGTTCTTCA
Seq A exon
GTGAGTGAGTCAGTTGATGGCTGGATGCGCTCAGCTCACAGATATTCAGTGTCCCTGTTCTCAGCACTGGTCGGCAGTCTGAGGAAGCAGAGGAGACCTTGCTTTG
Seq C2 exon
ATGTGATGACTGAAGCCCACCACAAATATGACCACTCTGAGGCTACAGGATCCTCAAGCTGGGATATCCAAAATTCTTTCAGAAGAGAGAAGCTGGAACAAAAATCCCCAGATTCGAAGACACTACAGGAAGATTCACCTGGAGTGAGACAAAGGGTCTATGAGTGCCAGGAGTGTGGAAAATCCTTCCGGCAAAAAGGTAGTCTAACGTTACATGAGAGAATCCACACTGGTCAAAAGCCTTTTGAGTGCACCCACTGTGGAAAAAGCTTCAGGGCCAAAGGCAATCTTGTTACACATCAACGGATACACACGGGAGAGAAGCCTTATCAGTGCAAGGAGTGTGGGAAAAGCTTCAGTCAACGAGGTAGTCTCGCTGTCCACGAGAGACTCCACACTGGACAGAAACCCTACGAGTGTGCTATTTGTCAGAGAAGCTTCAGGAATCAGAGTAACCTTGCTGTTCACAGGAGAGTTCACAGTGGTGAGAAGCCCTATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169740-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.5),PF132401=zinc_ribbon_2=WD(100=14.7),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=25.9),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACTGAGGTCGTAAGCA
R:
ACCCTTTGTCTCACTCCAGGT
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)