HsaALTD0007428-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:13098]
Coordinates
chr8:146003824-146005665:-
Coord C1 exon
chr8:146005617-146005665
Coord A exon
chr8:146005613-146005616
Coord C2 exon
chr8:146003824-146003910
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GTTGCGTTCTCTTCCCTCAGCTC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCCAAATAGTTGCATCACATGTATCTAATCCGAGAGTCTCATGCTTCTG
Seq A exon
GTAG
Seq C2 exon
CTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGAGTCTCATGCTTCTG
R:
GTGGGGCAGACAGGAACAAG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)