HsaALTD0007447-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000185219 | ZNF445
Description
zinc finger protein 445 [Source:HGNC Symbol;Acc:HGNC:21018]
Coordinates
chr3:44450447-44450962:-
Coord C1 exon
chr3:44450904-44450962
Coord A exon
chr3:44450868-44450903
Coord C2 exon
chr3:44450447-44450573
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGGGCACAGTGTTTTTTCAGGAG
3' ss Score
1.85
Exon sequences
Seq C1 exon
ATACTCCTGCTGCCCAGATGCCTGCCCTTTTCCCGAGAGAGGGGTGCCCGGGAGACCAG
Seq A exon
GTAACACCAACCAGGTCCCTGACAGCCCAGCTCCAG
Seq C2 exon
GAGACCATGACTTTCAAGGATGTGGAGGTGACCTTCTCCCAGGACGAGTGGGGGTGGCTGGACTCTGCTCAGAGGAACCTGTACAGGGATGTGATGCTGGAGAATTATAGGAACATGGCTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185219-22-25,23-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTTTTCCCGAGAGAGG
R:
CCTGTACAGGTTCCTCTGAGC
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development