HsaALTD0007450-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000178187 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr5:178941286-178942824:+
Coord C1 exon
chr5:178941286-178941386
Coord A exon
NA
Coord C2 exon
chr5:178942685-178942824
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
ACCCAGTTCTCTCCTAATAGCAG
3' ss Score
5.11
Exon sequences
Seq C1 exon
GCGACACGGGGCTGACCAGGCACGGTGGTCAAAGCCGCAGAGGGAGAGCGGGAGCGGTCGTGAGGTCGTCTGGGGAGAAGGGCGGAGGCAAAGCCGAGGAG
Seq A exon
NA
Seq C2 exon
CAGGTGTGTGGACCCTTCTAGCCTGAGGAGTCCTGCAGGTGTGAAGCTCCACACCTGCCTCCATAGCACTTTGCCTGTCCCTAAGAGGGCTCATCGGAGAAGAAAGAATGGCTGTCAGCCACCTGCCAACCATGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178187-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTCGTCTGGGGAGAAG
R:
TCTCCGATGAGCCCTCTTAGG
Band lengths:
142-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development