HsaALTD0007451-3/3 @ hg19
Alternative 5'ss
Gene
ENSG00000196263 | ZNF471
Description
zinc finger protein 471 [Source:HGNC Symbol;Acc:23226]
Coordinates
chr19:57022183-57022973:+
Coord C1 exon
chr19:57022183-57022269
Coord A exon
chr19:57022270-57022342
Coord C2 exon
chr19:57022886-57022973
Length
73 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TAACCTTTCCCTTCCTTCAGCCT
3' ss Score
9.23
Exon sequences
Seq C1 exon
TCCAAGGGTTTCAGTAAGAAGCAAAGCTGGGGTGACTGAAGCTCCTAACTGAAGCAGGAGACACCCTCACTTCTGTGTGACAGGAGG
Seq A exon
GTAATTAAGGGGCTGGGACAGAGGTGAGAGTGAAAGTGGCAGAATTGAGTGCTAAAGGTTCCATCGTTTCAGG
Seq C2 exon
CCTTGCCCTCCCAAGACACTGTTCTTCAAGAGAAAGACCAGAAGAGAAGGCAAAAATGAATGTTGAAGTAGTAAAAGTCATGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196263-1-2,2-2,3-2-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGGTTTCAGTAAGAAGCA
R:
TGGGGCATGACTTTTACTACTTCA
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)