HsaALTD0007455-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000197037 | ZNF498
Description
zinc finger protein 498 [Source:HGNC Symbol;Acc:21961]
Coordinates
chr7:99217288-99219197:+
Coord C1 exon
chr7:99217288-99217616
Coord A exon
chr7:99217617-99217620
Coord C2 exon
chr7:99218996-99219197
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTGTTGGGAACTGTTCTTAGGTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
TGGTGAAACTGGAGAAAGAGTTGCCATGGGGCAGAGGAAGGGAGGACCCTAGTCCAGAGACTTTTCGGCTGAGGTTTCGGCAGTTCCGCTACCAGGAGGCAGCTGGACCCCAGGAAGCTCTTAGGGAGCTCCAGGAGCTCTGTCGTCGGTGGCTGAGGCCCGAGTTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACTATCCTGCCCCGCGAGTTCTACGCCTGGATCCGGGAGCATGGCCCAGAGAGTGGCAAGGCCCTGGCCGCCATGGTGGAGGACCTGACAGAAAGAGCACTGGAGGCCAAGGCG
Seq A exon
GTGG
Seq C2 exon
GTTCCATGCCACAGGCAGGGAGAGCAGGAGGAAACAGCACTTTGCAGAGGCGCTTGGGAGCCAGGCATCCAGCTGGGGCCAGTGGAGGTCAAGCCTGAATGGGGGATGCCCCCTGGGGAAGGAGTTCAAGGTCCAGACCCAGGTACCGAGGAGCAGCTCAGTCAGGACCCTGGAGATGAGACACGGGCCTTCCAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197037-7-9,8-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.858
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=72.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGGAGGACCTGACAGA
R:
GCCTCTGCAAAGTGCTGTTTC
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)