HsaALTD0007460-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000163795 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:26498]
Coordinates
chr2:27600102-27601220:-
Coord C1 exon
chr2:27601197-27601220
Coord A exon
NA
Coord C2 exon
chr2:27600102-27600949
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
3' ss Seq
GACAAAGGCTTTGCCTGTAGCCT
3' ss Score
3.05
Exon sequences
Seq C1 exon
ATTTGAGCCTCCATGTGCCACCAG
Seq A exon
NA
Seq C2 exon
CCTCTGCCCCTTTGCCACTCACTATCCCAACCACCTGGCCCGGCACATGAAGACACACAGTGGTGAGAAGCCCTTCCGCTGCGCCCGCTGTCCTTATGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGCGTCCATACAGGAGAGAAGCCCTACAAGTGCCCCCTCTGCCCTTATGCCTGTGGCAATCTGGCCAACCTCAAGCGTCATGGTCGCATCCACTCTGGTGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAACCAGAGCATGAACCTCAAACGTCACATGCTGCGGCACACAGGCGAGAAGCCCTTCCGCTGTGCCACCTGCGCCTATACCACGGGCCACTGGGACAACTACAAGCGCCACCAGAAGGTGCATGGCCACGGTGGGGCAGGAGGGCCTGGTCTCTCTGCCTCTGAGGGCTGGGCCCCACCTCATAGCCCACCCTCTGTTTTGAGCTCTCGGGGCCCACCAGCCCTGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163795-6-8,7-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.298
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGAGCCTCCATGTGCCAC
R:
CAGAGTGGATGCGACCATGAC
Band lengths:
254-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)