HsaALTD0007477-2/3 @ hg19
Alternative 5'ss
Gene
ENSG00000213020 | ZNF611
Description
zinc finger protein 611 [Source:HGNC Symbol;Acc:28766]
Coordinates
chr19:53206066-53210791:-
Coord C1 exon
chr19:53210722-53210791
Coord A exon
chr19:53210674-53210721
Coord C2 exon
chr19:53206066-53210117
Length
48 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGG
5' ss Score
2.23
3' ss Seq
TTGGTGTTTATATTTTGTAGATA
3' ss Score
7.46
Exon sequences
Seq C1 exon
AGTCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCCTGGCTCACTGCAACCTCTACCTCCCAG
Seq A exon
GTTTAAGTGATTCTTGTGCTTCAGCCTCCTGAATAGCTGTGACTACAG
Seq C2 exon
ATATCTCTTCCAAATGCATGATGAAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATGAAAGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTGTCAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGACCAACATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATCTGCCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGCTCCCTCAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAATAATCCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213020-8-8,9-8,10-8-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF139001=GVQW=PU(82.6=76.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.0),PF0013017=C1_1=WD(100=7.9),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF0013017=C1_1=WD(100=10.3),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTTTGTCACCCAGGCTG
R:
GCAATGTCCCTGTGTGGATCA
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)