HsaALTD0007479-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000177842 | ZNF620
Description
zinc finger protein 620 [Source:HGNC Symbol;Acc:28742]
Coordinates
chr3:40547516-40547867:+
Coord C1 exon
chr3:40547516-40547616
Coord A exon
NA
Coord C2 exon
chr3:40547795-40547867
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCGC
5' ss Score
3.48
3' ss Seq
CTTCTTTATTTTCTCTTCAGTTT
3' ss Score
9.36
Exon sequences
Seq C1 exon
CGGCGGAGGGTCTCAAGCTTTCCCCGGTGTCGGCGGCAGGTGGAATTTCCACGCTTTATCTGCGCCTGCGCCGCGCGGGATTCGCGGTCCGAGCTGAAGAG
Seq A exon
NA
Seq C2 exon
TTTCACTTCTCCGAACCCTGAGGCAGTGTGTGAAGCTGGGACGCCAGCCATGTTCCAGACCGCTTGGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177842-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.021
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGCAGGTGGAATTTCC
R:
CAGCTTCACACACTGCCTCAG
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)