HsaALTD0007481-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000197566 | ZNF624
Description
zinc finger protein 624 [Source:HGNC Symbol;Acc:29254]
Coordinates
chr17:16552972-16557178:-
Coord C1 exon
chr17:16557078-16557178
Coord A exon
chr17:16556882-16557077
Coord C2 exon
chr17:16552972-16553060
Length
196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGCTTATTTCTCTTCCTTAGGTA
3' ss Score
10.56
Exon sequences
Seq C1 exon
TGCCCTGCCTGGAGGCCGGCACCGCCGAGCCGCCGCCATTGCTGGAAGCGTTCCCGCCCTGCTCTGCGAGTTCCCTCAGTTGTCCTCAGTTCGGCCGCCAG
Seq A exon
GTACTCGTTGTCCCGGGCGCCTGGCCTCGGTTGCCCGCCGCCCCTCCCTTGGCGCTTGGCTCCCGGCGGCGTCCGGGGCGTGGCCGTTCCCTCTAGAGCCCCTGTCCCTGAGCGGACCCGCCCACTCCTGAGAGGCGATTGGGGCTGGGCCTCCTTCCCGAGTGTGGGTTCAGTCTCCAGCTGGCCTCCCTCACAG
Seq C2 exon
GTATGTCTTTGCAAGACTCCACTCTTTCCAGAGAGGGGAAACCAGAGGGAGAGATTATGGCTGCTGTGTTTTTCTCAGTTGGACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197566-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGCTGGAAGCGTTC
R:
AGGCGTCCAACTGAGAAAAACA
Band lengths:
155-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)