HsaALTD0007483-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000221994 | ZNF630
Description
zinc finger protein 630 [Source:HGNC Symbol;Acc:28855]
Coordinates
chrX:47926260-47930933:-
Coord C1 exon
chrX:47930833-47930933
Coord A exon
chrX:47930634-47930832
Coord C2 exon
chrX:47926260-47926449
Length
199 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
ATCCATGATTATTACCTTAGGAC
3' ss Score
4.79
Exon sequences
Seq C1 exon
CGGAGATATCACGAGGACTCCCCCGGGCCCCCAAACGCACCTCTCCTCTGGCTGGAATGGGAGCCTCCAGAAGCAGTGCGAGACCACGGCCAGCGACAGAG
Seq A exon
GTCCTGGCGCTGGCGGAATGACGCCATTTTTGTTACTGGTAGAGCTCGGCTTCGTGGCTGTTTCGGAGCCACCGAAAGATAAGCTCCCTCGTCACCCTGACATCTCTCCGGGAAGACTGGAAGGGAAATGGCCTTTCGGGGGATGTTGAACGCATTTGGGCAGGCGGGGAGCCAAGCCCGGCTTGAGAGCAGAGCCGGG
Seq C2 exon
GACGAAGTTCCGGAAATGGAATTACCGAGTCAGATGAGAAACACAAGTCATCAATGAATTAACAAGCAACACATTGTCACATCCAGCTGTTGAAGAGTGGTTAACTCAGCTTGATCTCCGAAGACTCTTCTGCACCCCACCCCGCCCCCAACTGCTTTCCAAAGAGAAACAGAAAATGATTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221994-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=PU(3.2=20.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGATATCACGAGGACTCCC
R:
GGTGGGGTGCAGAAGAGTCTT
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)