HsaALTD0007491-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000179195 | ZNF664
Description
zinc finger protein 664 [Source:HGNC Symbol;Acc:25406]
Coordinates
chr12:124457750-124458567:+
Coord C1 exon
chr12:124457750-124457850
Coord A exon
NA
Coord C2 exon
chr12:124458433-124458567
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GGGTGCTGTGTGTTTTTCAGGGC
3' ss Score
10.72
Exon sequences
Seq C1 exon
GCGTGCGCACGCGCGCTGTCCCCCGGAGGCGTCTGGGTGTGCGGAGCGCGCGCGCGCGCGGCTCGGAGGCGCACCTGTGAGGTGTCCCTGAGGAGAGGGAG
Seq A exon
NA
Seq C2 exon
GGCGCCCTGCGTCCGGCAGAGGAGGCGAGCATCCCGCTCAGGTGATGAGGAACCCCTCGCGCACCCAGCGCAGAAGGCTGCTGCCGCCGGACGCCTCCATTGTTTGACCACAACAAGGGCCGGATTCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179195-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTGTCCCTGAGGAGAG
R:
TGGTCAAACAATGGAGGCGTC
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)