HsaALTD0007501-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000185730 | ZNF696
Description
zinc finger protein 696 [Source:HGNC Symbol;Acc:25872]
Coordinates
chr8:144373592-144375235:+
Coord C1 exon
chr8:144373592-144373780
Coord A exon
chr8:144373781-144373937
Coord C2 exon
chr8:144375142-144375235
Length
157 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
CTTTTCTTTTACCTAAGCAGAAA
3' ss Score
6.89
Exon sequences
Seq C1 exon
GGGTGCAGTCCAGCTGCTCTGGACGCTGAGGCCCCGGCTTCTCTTGCTGGGGTGTCGATTCGGGAGGGCTGAGGGCGCGGCCGAGAGAACGGGGCGGTCACCGCCGCCGTGGCCCGCGCGTCCCGCGCTCTCCTTGCAGTGCAGGCCCCAGCCGCTCTCGGGCGCGGCGTGGGGGAGGCGGCCCTGCAG
Seq A exon
GTGCGTACCCGGGGTCCGACACGTGCGGGGCTTCCTGCGAGCTGAGTCCCCGCTGCGCGTCTTCAGGCCTTTGTAAGTTGTCAAATTTCCCACCGGCCCAGCTCATCGAGCTTCTTCCCAGCTGTGAACAGGAGGGCCTGTTCCCTAATTCTTGCCG
Seq C2 exon
AAATTGTTCCAACTGCTGGTGTTCTGCAAGATGGAGCCAGGAGGAGAGCCCACAGGTGCTAAAGAGAGCAGTACCCTGATGGAGTCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185730-2-7,3-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.880
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTGCTGGGGTGTCGATT
R:
GCAAGGGACTCCATCAGGGTA
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)