HsaALTD0007524-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000152475 | ZNF837
Description
zinc finger protein 837 [Source:HGNC Symbol;Acc:25164]
Coordinates
chr19:58878985-58881295:-
Coord C1 exon
chr19:58881186-58881295
Coord A exon
NA
Coord C2 exon
chr19:58878985-58880728
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTTCTCTGCTCTTCCAGATC
3' ss Score
12.25
Exon sequences
Seq C1 exon
ATGAGGCTGCCAGCCTTGAGAGCACCACCGTTACCTGGTTGAAGAGGGGAGGGGAAGTCCAGCATTGGCCTCTGCAGCGTGGATCTCCCGGCCAGGCTCTCAGCTGTCAG
Seq A exon
NA
Seq C2 exon
ATCCTACAACCAGAACTCTGCGCCCCAGGATGGAGGCTCCAGCCCAGAAGGCTGGGCAGGGAGGACTCCCCAAGGCCGATGCCCAGGGTGCCTCCGGGGCCCGGGAGAAGAGGCCCGAGGAGCCGAGGCCCCTCGAAGAGGACCGAGCTGGGAGCCGCCCCACTCAAAAGGGGGACCTGCGTGGAGCGGCGGGCGGTAGGACGACTCCCCCAGGCGGGGGCTCCCGGGGCTGCAGCCTCGGGGTGAGCCCCGGCCCGGGGACCCGGCACAGCGCCGGGACCAGACCCCTCGTGCGGGAGCCGTGCGGCCCCACCTCTTCTCAGAACCCTGAGCTGGTTATCCCCGAGGGGCTGCAAGCCCGGGAGGGCCCCTGTAGGAGCCCAGCGCGTGGCGGGGACTGCAGCAGGAACTCCTGCCTGGCGTGGCATCGCGGGGCGCCCGCTGGGGAGACGCCACCCGTGTGTGACCCCTGTCCGGAGCGGATCCAGAACCACCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152475-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAAGAGGGGAGGGGAAGT
R:
GCAGGTCCCCCTTTTGAGTG
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)