HsaALTD0007526-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:13159]
Coordinates
chr12:133614031-133618068:+
Coord C1 exon
chr12:133614031-133614131
Coord A exon
chr12:133614132-133614140
Coord C2 exon
chr12:133617864-133618068
Length
9 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GAAGTACATTTCTCCCGAAGTCC
3' ss Score
1.73
Exon sequences
Seq C1 exon
GGCCGACGGTTTGGGCGCGTGCGCGGGACACGGGGGACGGGCGGTGTCACGTGATCGCGAGGCCGCGGGCGCGCGGGCGCGACTCGGCGGCGGCGTCTTTT
Seq A exon
GTGAGTTCA
Seq C2 exon
TCCACAGATCCTGGTCCCTACAAATAAGCCTGCTCATGTGAGATAAGAAAGGAGTTCCTGGAACCAGGAATTCATTCTCAGTGTAGAAGACCTAGCTGAGACCTCACTCCACAGTTTTGGGGCAGAAGCAGAAGAGACGCACAGTAGAACCGATCTCAGCCTTGCTGATCATCTCGTACAGCAGCAGAAAATGACCATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCACGTGATCGCGAG
R:
GCAGGCTTATTTGTAGGGACCA
Band lengths:
92-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)