HsaALTD1000523-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000006788 | MYH13
Description
myosin heavy chain 13 [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr17:10306939-10309437:-
Coord C1 exon
chr17:10309234-10309437
Coord A exon
chr17:10308957-10309233
Coord C2 exon
chr17:10306939-10307064
Length
277 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGG
5' ss Score
6.01
3' ss Seq
ATATCTAATTCTTCTTGTAGAAC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GACTCCCAGCTGCATCTCGATGACGCCCTGAGGAGCAATGAGGACCTCAAGGAGCAGCTGGCCATCGTGGAGCGCAGGAATGGCCTCCTGCTGGAGGAGCTGGAGGAAATGAAGGTGGCCCTGGAACAGACGGAGCGGACCCGCAGGCTGTCAGAGCAGGAGCTGCTGGACGCCAGCGACCGCGTGCAGCTCCTGCACTCCCAG
Seq A exon
GTGCGTCGGCCCTCACTCCTCCGCTGAAGGTCCACCCTGGGGCAGATAGCGCCTCCTGCACCGTGCAGCTGCTTCCGCTATCCCTCCACTCAGGGCCCACGCCGTGGGAAGGAGCACCCGGTTTCTCCCAGACTAGTGGTCAAGACAAATTTTCTTTTAAGCTTGCTTCTTGGAATAACTGACTCTTGATTGACAGATTTCTGAGCTTTCTCTCATCCAAACATTAAACATCTTGCACGTTGTGGGGAAATCAGAGCAACGAAGGATTAATTATTAC
Seq C2 exon
AACACAAGCCTGATAAATACCAAGAAAAAACTGGAGGCTGACATAGCTCAGTGCCAGGCAGAGGTGGAGAACTCGATCCAGGAGTCCAGGAACGCAGAGGAGAAGGCCAAGAAGGCCATCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-38-37,39-37-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGGAGCAATGAGGACCT
R:
CTTCTTGGCCTTCTCCTCTGC
Band lengths:
292-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains