HsaALTD1000598-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000007376 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
Coordinates
chr16:784974-786928:-
Coord C1 exon
chr16:786827-786928
Coord A exon
chr16:786825-786826
Coord C2 exon
chr16:784974-786377
Length
2 bp
Sequences
Splice sites
5' ss Seq
GGTGTGTCT
5' ss Score
-8.05
3' ss Seq
GCACCGCCCTCATCCCGCAGGCC
3' ss Score
11.03
Exon sequences
Seq C1 exon
GTTGTGAGAACCCAAAGCCAAGCCTCACAGATCTCGTGGTTCTGGAACACGGGCTGTACGCAGGCGATCCTGTCTCCAAAGTGCTGCTGAAGCCGCTCACGG
Seq A exon
GT
Seq C2 exon
GCCGGACACACCAGCTGCGCGTGCACTGCAGTGCCCTGGGCCACCCCGTGGTGGGCGACCTGACCTACGGAGAAGTCTCGGGCCGGGAGGACCGGCCGTTCAGAATGATGCTGCACGCTTTCTACCTGCGCATCCCCACGGACACCGAGTGTGTGGAGGTCTGCACGCCTGACCCCTTCCTGCCCTCCCTGGATGCCTGCTGGAGCCCCCACACACTGCTGCAGTCGCTGGACCAGCTCGTGCAGGCCTTACGGGCCACCCCCGACCCTGACCCCGAGGATAGGGGCCCCAGGCCAGGCAGCCCCTCCGCACTCCTGCCTGGGCCCGGCCGGCCTCCTCCACCCCCAACCAAGCCCCCTGAGACTGAGGCACAGCGGGGCCCCTGCCTGCAGTGGCTGTCGGAGTGGACGCTGGAACCGGACAGCTGAGAGCCGTGGGGCTGGGGCAGGGGGTGTCAGCTGCACAGCGGGACTCTAGGGAGATGGGCGAGCGAGCGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007376-12-12,14-12,15-12-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.438
Domain overlap (PFAM):
C1:
PF0160011=Corona_S1=PD(13.4=53.3),PF0084917=PseudoU_synth_2=PD(16.3=56.7)
A:
NA
C2:
PF0084917=PseudoU_synth_2=PD(6.6=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGTCTCCAAAGTGCTGC
R:
CGTAGGTCAGGTCGCCCA
Band lengths:
105-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains