HsaALTD1000600-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000007376 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
Coordinates
chr16:786827-787179:-
Coord C1 exon
chr16:787153-787179
Coord A exon
chr16:787077-787152
Coord C2 exon
chr16:786827-786928
Length
76 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGG
5' ss Score
2.35
3' ss Seq
ACCTGCCTTCTGCGCCCCAGGTT
3' ss Score
8.29
Exon sequences
Seq C1 exon
CTGCGGGGGCACATCCAGGAGAGCCGG
Seq A exon
GTAACCATCAGCCATGCCATTGGCAGGAACAGCACGGAGGGCCGGGCCCACACCATGTGCATCGAGGGCTCGCAGG
Seq C2 exon
GTTGTGAGAACCCAAAGCCAAGCCTCACAGATCTCGTGGTTCTGGAACACGGGCTGTACGCAGGCGATCCTGTCTCCAAAGTGCTGCTGAAGCCGCTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007376-6-10,7-10,8-10,9-10,10-10-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0084917=PseudoU_synth_2=PD(23.7=80.0)
A:
NA
C2:
PF0160011=Corona_S1=PD(13.4=53.3),PF0084917=PseudoU_synth_2=PD(16.3=56.7)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCACATCCAGGAGAG
R:
CGTGAGCGGCTTCAGCAG
Band lengths:
124-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains