HsaALTD1000857-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52437971-52438961:-
Coord C1 exon
chr3:52438920-52438961
Coord A exon
chr3:52438745-52438919
Coord C2 exon
chr3:52437971-52438199
Length
175 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CTGCTTCTGTCCCTCCCCAGCAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
GTGCCAACACCTATCACCGAAATGGAGATCTCTGTCAAAAGG
Seq A exon
GTAAGAACAGCTGCCACCCTCCTCTTGGACCCCCCTTCTGCCCCTGCTCCGCAGCCTCCTCCTCTGCCCCTGCTCCGCAGCCTCCTCGAGCTCCACTGTAGTCTGGGGAAAGCTGTGCTGAGGCAGGCCTGATTCGCCCCTGCAACAAGTGGCCAGTGGGCACTGGAGGCACCGA
Seq C2 exon
CAAATGCTATACGTGGGCTCTCGGCTGGGTGTGGCCCAGCTGCGGCTGCACCAATGTGAGACTTACGGCACTGCCTGTGCAGAGTGCTGCCTGGCCCGGGACCCATACTGTGCCTGGGATGGTGCCTCCTGTACCCACTACCGCCCCAGCCTTGGCAAGCGCCGGTTCCGCCGGCAGGACATCCGGCACGGCAACCCTGCCCTGCAGTGCCTGGGCCAGAGCCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319-15-16,16-16-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
NA
C2:
PF0143720=PSI=PU(96.7=76.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAACACCTATCACCGAA
R:
GATGTCCTGCCGGCGGAA
Band lengths:
225-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains